Download Computing and Combinatorics: 11th Annual International by Leslie G. Valiant (auth.), Lusheng Wang (eds.) PDF

By Leslie G. Valiant (auth.), Lusheng Wang (eds.)

The refereed court cases of the eleventh Annual foreign Computing and Combinatorics convention, COCOON 2005, held in Kunming, China in August 2005.

The ninety six revised complete papers awarded including abstracts of three invited talks have been conscientiously reviewed and chosen from 353 submissions. The papers disguise such a lot facets of theoretical laptop technology and combinatorics on the topic of computing and are geared up in topical sections on bioinformatics, networks, string algorithms, scheduling, complexity, steiner timber, graph drawing and format layout, quantum computing, randomized algorithms, geometry, codes, finance, facility situation, graph conception, graph algorithms.

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Read or Download Computing and Combinatorics: 11th Annual International Conference, COCOON 2005, Kunming, China, August 16-29, 2005. Proceedings PDF

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Extra resources for Computing and Combinatorics: 11th Annual International Conference, COCOON 2005, Kunming, China, August 16-29, 2005. Proceedings

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G and H such that d(G , H ) ≤ k. t. |C | ≤ k . , that in each Ci ∈ C, any ej ∈ Ci is also in Cj with 1 ≤ i, j ≤ m and i = j. In fact, by definition, if an element is covered by only one subset then this subset must be part of C . In the following, we will prove that, even if G does not contain more than one occurrence of each duplicated gene, ECID problem is NP-complete. Given an integer k , two exemplar genomes G and H , one can compute polynomially d(G , H ) and check if d(G , H ) ≤ k (see [1]).

A sequence s is called (a, c, g, u, x)-sequence if s contains a letters A, c letters C, g letters G, u letters U and the last letter of s is x. We use 6-dimensional array M [n, n, n, n, n, 4] whose elements are defined as follows. Let 1 ≤ i, j, k ≤ n and x ∈ {A, C, G, U } and l = LCS[i, j]. Let 40 Sergey Bereg and Binhai Zhu 0 ≤ a, c, g ≤ l be any integers such that u = l − a − c − g ∈ [0, l]. The value M [i, j, a, c, g, x] is -1 if there is there is no (a, c, g, u, x)-sequence s of length l that is the common subsequence of a1 , a2 , .

9. M. M. E. Moret. Genomic distances under deletions and inversions. Proceedings of COCOON 03, 2697 of LNCS:537–547, 2003. 10. B. M. E. Moret, A. C. Siepel, J. Tang, and T. Liu. Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data. In WABI 2002, volume 2452 volume of LNCS, pages 521–536. Springer Verlag, 2002. 11. D. Sankoff. Genome rearrangement with gene families. Bioinformatics, 15(11):909– 917, 1999. 12. M. Swenson, M. E. Moret. Approximating the true evolutionary distance between two genomes.

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